Package: pop 0.2
pop: A Flexible Syntax for Population Dynamic Modelling
Population dynamic models underpin a range of analyses and applications in ecology and epidemiology. The various approaches for analysing population dynamics models (MPMs, IPMs, ODEs, POMPs, PVA) each require the model to be defined in a different way. This makes it difficult to combine different modelling approaches and data types to solve a given problem. 'pop' aims to provide a flexible and easy to use common interface for constructing population dynamic models and enabling to them to be fitted and analysed in lots of different ways.
Authors:
pop_0.2.tar.gz
pop_0.2.zip(r-4.5)pop_0.2.zip(r-4.4)pop_0.2.zip(r-4.3)
pop_0.2.tgz(r-4.4-any)pop_0.2.tgz(r-4.3-any)
pop_0.2.tar.gz(r-4.5-noble)pop_0.2.tar.gz(r-4.4-noble)
pop_0.2.tgz(r-4.4-emscripten)pop_0.2.tgz(r-4.3-emscripten)
pop.pdf |pop.html✨
pop/json (API)
| # Install 'pop' in R: |
| install.packages('pop', repos = c('https://goldingn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/goldingn/pop/issues
Last updated 8 years agofrom:b722cb0246. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 04 2024 |
| R-4.5-win | OK | Nov 04 2024 |
| R-4.5-linux | OK | Nov 04 2024 |
| R-4.4-win | OK | Nov 04 2024 |
| R-4.4-mac | OK | Nov 04 2024 |
| R-4.3-win | OK | Nov 04 2024 |
| R-4.3-mac | OK | Nov 04 2024 |
Exports:areaarea<-as.landscapeas.transfunddispersaldistancedistance<-dynamicfeaturesfeatures<-is.dispersalis.dynamicis.landscapeis.pop_projectionis.probabilityis.rateis.simulationis.transfunis.transitionlandscapelandscape<-pparametersparameters<-populationpopulation<-probabilityprojectionrratesimulationstatestrtransition
Dependencies:clicpp11glueigraphlatticelifecyclemagrittrMASSMatrixpkgconfigrlangvctrs
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| create a transition function | as.transfun |
| dispersal transfun | d dispersal is.dispersal |
| dynamic objects | as.matrix.dynamic dynamic is.dynamic parameters.dynamic parameters<-.dynamic plot.dynamic print.dynamic states |
| landscape objects | area area<- as.landscape distance distance<- features features<- is.landscape landscape landscape<- population population<- print.landscape [[.landscape |
| get and set parameters | parameters parameters<- |
| pop: A Flexible Syntax for Population Dynamic Modelling | pop-package pop |
| probability transfun | is.probability p probability |
| Deterministic projection | is.pop_projection plot.pop_projection projection |
| rate transfun | is.rate r rate |
| Stochastic Simulation | is.simulation plot.simulation simulation |
| transfun objects | *.transfun is.transfun parameters.transfun parameters<-.transfun print.transfun transfun |
| transition objects | *.transition is.transition parameters.transition parameters<-.transition print.transition tr transition |
